IL_9SPI_047

3D structure

PDB id

9SPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SPI_047 not in the Motif Atlas

Homologous match to IL_8GLP_059

Geometric discrepancy: 0.0296

The information below is about IL_8GLP_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.5

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

29

Unit IDs

9SPI|1|L5|C|1551
9SPI|1|L5|G|1552
9SPI|1|L5|A|1553
9SPI|1|L5|A|1554
9SPI|1|L5|G|1555
*
9SPI|1|L5|U|1572
9SPI|1|L5|G|1573
9SPI|1|L5|G|1574
9SPI|1|L5|A|1575
9SPI|1|L5|G|1576

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2

Chain LR

60S ribosomal protein L19

Chain Lp

60S ribosomal protein L37a