IL_9SPI_056

3D structure

PDB id

9SPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GCGAA(PSU)*AAAC

Length

10 nucleotides

Bulged bases

9SPI|1|L5|G|1741

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SPI|1|L5|G|1739
9SPI|1|L5|C|1740
9SPI|1|L5|G|1741
9SPI|1|L5|A|1742
9SPI|1|L5|A|1743
9SPI|1|L5|PSU|1744
*
9SPI|1|L5|A|1786
9SPI|1|L5|A|1787
9SPI|1|L5|A|1788
9SPI|1|L5|C|1789

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

60S ribosomal protein L5

Chain LI

60S ribosomal protein L10

Chain LT

60S ribosomal protein L21