IL_9SPI_095

3D structure

PDB id

9SPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

9SPI|1|L5|A|3663, 9SPI|1|L5|U|3679, 9SPI|1|L5|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SPI|1|L5|C|3660
9SPI|1|L5|G|3661
9SPI|1|L5|A|3662
9SPI|1|L5|A|3663
9SPI|1|L5|G|3664
9SPI|1|L5|G|3665
*
9SPI|1|L5|U|3677
9SPI|1|L5|G|3678
9SPI|1|L5|U|3679
9SPI|1|L5|U|3680
9SPI|1|L5|G|3681
9SPI|1|L5|A|3682
9SPI|1|L5|C|3683
9SPI|1|L5|G|3684

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2

Chain Lp

60S ribosomal protein L37a