IL_9SPI_123

3D structure

PDB id

9SPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

9SPI|1|L5|A|4488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SPI_123 not in the Motif Atlas

Homologous match to IL_8GLP_150

Geometric discrepancy: 0.0636

The information below is about IL_8GLP_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09353.2

Basepair signature

cWW-cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

9SPI|1|L5|U|4468
9SPI|1|L5|U|4469
9SPI|1|L5|G|4470
*
9SPI|1|L5|C|4485
9SPI|1|L5|C|4486
9SPI|1|L5|A|4487
9SPI|1|L5|A|4488
9SPI|1|L5|G|4489

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Ubiquitin-ribosomal protein eL40 fusion protein