IL_9SPI_168

3D structure

PDB id

9SPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CA(PSU)U*ACCUCGGG

Length

12 nucleotides

Bulged bases

9SPI|1|S2|U|305, 9SPI|1|S2|G|307

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SPI|1|S2|C|216
9SPI|1|S2|A|217
9SPI|1|S2|PSU|218
9SPI|1|S2|U|219
*
9SPI|1|S2|A|302
9SPI|1|S2|C|303
9SPI|1|S2|C|304
9SPI|1|S2|U|305
9SPI|1|S2|C|306
9SPI|1|S2|G|307
9SPI|1|S2|G|308
9SPI|1|S2|G|309

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SI

40S ribosomal protein S8