IL_9SPI_206

3D structure

PDB id

9SPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGA*U(PSU)

Length

5 nucleotides

Bulged bases

9SPI|1|S2|G|1207

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SPI_206 not in the Motif Atlas

Homologous match to IL_9PN5_196

Geometric discrepancy: 0.1269

The information below is about IL_9PN5_196

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

83

Unit IDs

9SPI|1|S2|G|1206
9SPI|1|S2|G|1207
9SPI|1|S2|A|1208
*
9SPI|1|S2|U|1691
9SPI|1|S2|PSU|1692

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Mr

Synthetic mRNA

Chain Sa

40S ribosomal protein S26