IL_9SPI_232
3D structure
- PDB id
- 9SPI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UUG*UA
- Length
- 5 nucleotides
- Bulged bases
- 9SPI|1|S2|U|1721
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SPI_232 not in the Motif Atlas
- Homologous match to IL_9PN5_226
- Geometric discrepancy: 0.0802
- The information below is about IL_9PN5_226
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_97561.8
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 192
Unit IDs
9SPI|1|S2|U|1720
9SPI|1|S2|U|1721
9SPI|1|S2|G|1722
*
9SPI|1|S2|U|1812
9SPI|1|S2|A|1813
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LV
- 60S ribosomal protein L23
- Chain Ln
- 60S ribosomal protein L41
- Chain SX
- 40S ribosomal protein S23
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