IL_9SRA_023
3D structure
- PDB id
- 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GCAC*GGGUGAAAAGAGC
- Length
- 17 nucleotides
- Bulged bases
- 9SRA|1|1|G|660
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRA_023 not in the Motif Atlas
- Geometric match to IL_9AXU_014
- Geometric discrepancy: 0.1115
- The information below is about IL_9AXU_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44923.3
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 10
Unit IDs
9SRA|1|1|G|635
9SRA|1|1|C|636
9SRA|1|1|A|637
9SRA|1|1|C|638
*
9SRA|1|1|G|649
9SRA|1|1|G|650
9SRA|1|1|G|651
9SRA|1|1|U|652
9SRA|1|1|G|653
9SRA|1|1|A|654
9SRA|1|1|A|655
9SRA|1|1|A|656
9SRA|1|1|A|657
9SRA|1|1|G|658
9SRA|1|1|A|659
9SRA|1|1|G|660
9SRA|1|1|C|661
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BS
- Large ribosomal subunit protein uL22
- Chain BU
- Large ribosomal subunit protein uL24
- Chain Bf
- Large ribosomal subunit protein eL39
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