IL_9SRA_024

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

(4AC)GAAAG*CGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRA_024 not in the Motif Atlas

Geometric match to IL_9E6Q_019

Geometric discrepancy: 0.1558

The information below is about IL_9E6Q_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93336.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

5

Unit IDs

9SRA|1|1|4AC|694
9SRA|1|1|G|695
9SRA|1|1|A|696
9SRA|1|1|A|697
9SRA|1|1|A|698
9SRA|1|1|G|699
*
9SRA|1|1|C|755
9SRA|1|1|G|756
9SRA|1|1|G|757

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain B4

50S ribosomal protein L7Ae

Chain Bb

Large ribosomal subunit protein eL32

Chain Bc

Large ribosomal subunit protein eL33