IL_9SRA_025
3D structure
- PDB id
- 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GAAUGAGC*GGGAC
- Length
- 13 nucleotides
- Bulged bases
- 9SRA|1|1|U|703
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRA_025 not in the Motif Atlas
- Geometric match to IL_5G4T_002
- Geometric discrepancy: 0.1603
- The information below is about IL_5G4T_002
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90775.3
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 30
Unit IDs
9SRA|1|1|G|700
9SRA|1|1|A|701
9SRA|1|1|A|702
9SRA|1|1|U|703
9SRA|1|1|G|704
9SRA|1|1|A|705
9SRA|1|1|G|706
9SRA|1|1|C|707
*
9SRA|1|1|G|750
9SRA|1|1|G|751
9SRA|1|1|G|752
9SRA|1|1|A|753
9SRA|1|1|C|754
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain B4
- 50S ribosomal protein L7Ae
- Chain Bb
- Large ribosomal subunit protein eL32
- Chain Bc
- Large ribosomal subunit protein eL33
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