IL_9SRA_030

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGCAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRA_030 not in the Motif Atlas

Homologous match to IL_4V9F_022

Geometric discrepancy: 0.1239

The information below is about IL_4V9F_022

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.3

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9SRA|1|1|C|855
9SRA|1|1|G|856
9SRA|1|1|C|857
9SRA|1|1|A|858
9SRA|1|1|G|859
*
9SRA|1|1|U|877
9SRA|1|1|G|878
9SRA|1|1|A|879
9SRA|1|1|G|880
9SRA|1|1|G|881

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BP

Large ribosomal subunit protein eL18