IL_9SRA_035
3D structure
- PDB id
- 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UGAAG*UGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRA_035 not in the Motif Atlas
- Homologous match to IL_4V9F_027
- Geometric discrepancy: 0.1178
- The information below is about IL_4V9F_027
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_15190.4
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 26
Unit IDs
9SRA|1|1|U|952
9SRA|1|1|G|953
9SRA|1|1|A|954
9SRA|1|1|A|955
9SRA|1|1|G|956
*
9SRA|1|1|U|973
9SRA|1|1|G|974
9SRA|1|1|G|975
9SRA|1|1|A|976
9SRA|1|1|G|977
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BB
- Large ribosomal subunit protein uL2
- Chain BQ
- Large ribosomal subunit protein eL19
- Chain Bi
- Large ribosomal subunit protein eL43
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