IL_9SRA_038

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

9SRA|1|1|G|1027, 9SRA|1|1|A|1039, 9SRA|1|1|A|1040, 9SRA|1|1|U|1041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRA_038 not in the Motif Atlas

Homologous match to IL_4V9F_030

Geometric discrepancy: 0.0878

The information below is about IL_4V9F_030

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_57881.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

9SRA|1|1|G|1026
9SRA|1|1|G|1027
9SRA|1|1|G|1028
*
9SRA|1|1|C|1038
9SRA|1|1|A|1039
9SRA|1|1|A|1040
9SRA|1|1|U|1041
9SRA|1|1|C|1042

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BB

Large ribosomal subunit protein uL2

Chain BM

Large ribosomal subunit protein eL15

Chain BS

Large ribosomal subunit protein uL22

Chain Be

Large ribosomal subunit protein eL37