IL_9SRA_045

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AUUG*CUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRA_045 not in the Motif Atlas

Homologous match to IL_4V9F_036

Geometric discrepancy: 0.3311

The information below is about IL_4V9F_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02203.1

Basepair signature

cWW-cSW-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9SRA|1|1|A|1122
9SRA|1|1|U|1123
9SRA|1|1|U|1124
9SRA|1|1|G|1125
*
9SRA|1|1|C|1156
9SRA|1|1|U|1157
9SRA|1|1|G|1158
9SRA|1|1|U|1159

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BN

Large ribosomal subunit protein uL16