IL_9SRA_047

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGCAG*CGG

Length

8 nucleotides

Bulged bases

9SRA|1|1|A|1133

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRA_047 not in the Motif Atlas

Geometric match to IL_6CK5_011

Geometric discrepancy: 0.1996

The information below is about IL_6CK5_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.4

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

12

Unit IDs

9SRA|1|1|U|1130
9SRA|1|1|G|1131
9SRA|1|1|C|1132
9SRA|1|1|A|1133
9SRA|1|1|G|1134
*
9SRA|1|1|C|1149
9SRA|1|1|G|1150
9SRA|1|1|G|1151

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BE

Large ribosomal subunit protein uL5