IL_9SRA_050
3D structure
- PDB id
- 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UUAAG*CGAGA
- Length
- 10 nucleotides
- Bulged bases
- 9SRA|1|1|G|1411
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRA_050 not in the Motif Atlas
- Homologous match to IL_4V9F_037
- Geometric discrepancy: 0.1319
- The information below is about IL_4V9F_037
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_08938.3
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 24
Unit IDs
9SRA|1|1|U|1248
9SRA|1|1|U|1249
9SRA|1|1|A|1250
9SRA|1|1|A|1251
9SRA|1|1|G|1252
*
9SRA|1|1|C|1408
9SRA|1|1|G|1409
9SRA|1|1|A|1410
9SRA|1|1|G|1411
9SRA|1|1|A|1412
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain BY
- Large ribosomal subunit protein uL30
- Chain Bb
- Large ribosomal subunit protein eL32
- Chain Bc
- Large ribosomal subunit protein eL33
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