IL_9SRA_063

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GCAAU*AGC

Length

8 nucleotides

Bulged bases

9SRA|1|1|G|1592

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRA_063 not in the Motif Atlas

Homologous match to IL_4V9F_051

Geometric discrepancy: 0.1929

The information below is about IL_4V9F_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.14

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

9SRA|1|1|G|1579
9SRA|1|1|C|1580
9SRA|1|1|A|1581
9SRA|1|1|A|1582
9SRA|1|1|U|1583
*
9SRA|1|1|A|1591
9SRA|1|1|G|1592
9SRA|1|1|C|1593

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BQ

Large ribosomal subunit protein eL19

Chain BS

Large ribosomal subunit protein uL22

Chain Bf

Large ribosomal subunit protein eL39