IL_9SRA_074
3D structure
- PDB id
- 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGAACU(OMC)GG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- 9SRA|1|1|G|2233
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRA_074 not in the Motif Atlas
- Geometric match to IL_9E6Q_064
- Geometric discrepancy: 0.0511
- The information below is about IL_9E6Q_064
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80252.3
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 11
Unit IDs
9SRA|1|1|G|1942
9SRA|1|1|G|1943
9SRA|1|1|A|1944
9SRA|1|1|A|1945
9SRA|1|1|C|1946
9SRA|1|1|U|1947
9SRA|1|1|OMC|1948
9SRA|1|1|G|1949
9SRA|1|1|G|1950
*
9SRA|1|1|C|2231
9SRA|1|1|U|2232
9SRA|1|1|G|2233
9SRA|1|1|U|2234
9SRA|1|1|C|2235
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BC
- Large ribosomal subunit protein uL3
- Chain BJ
- Large ribosomal subunit protein uL14
Coloring options: