IL_9SRA_082

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGAAG*UGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRA_082 not in the Motif Atlas

Geometric match to IL_9DFE_074

Geometric discrepancy: 0.2208

The information below is about IL_9DFE_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

UAA/GAN with extra stack

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9SRA|1|1|U|2107
9SRA|1|1|G|2108
9SRA|1|1|A|2109
9SRA|1|1|A|2110
9SRA|1|1|G|2111
*
9SRA|1|1|U|2128
9SRA|1|1|G|2129
9SRA|1|1|A|2130
9SRA|1|1|A|2131
9SRA|1|1|G|2132

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BB

Large ribosomal subunit protein uL2