IL_9SRA_089

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAG*UGGG

Length

7 nucleotides

Bulged bases

9SRA|1|1|G|2468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRA_089 not in the Motif Atlas

Homologous match to IL_4V9F_076

Geometric discrepancy: 0.1221

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.4

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

9SRA|1|1|C|2321
9SRA|1|1|A|2322
9SRA|1|1|G|2323
*
9SRA|1|1|U|2466
9SRA|1|1|G|2467
9SRA|1|1|G|2468
9SRA|1|1|G|2469

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BB

Large ribosomal subunit protein uL2

Chain BM

Large ribosomal subunit protein eL15

Chain Bj

Large ribosomal subunit protein eL42