IL_9SRA_092

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGUCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9SRA|1|1|C|2372

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRA_092 not in the Motif Atlas

Geometric match to IL_7JRS_007

Geometric discrepancy: 0.2749

The information below is about IL_7JRS_007

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.3

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9SRA|1|1|C|2369
9SRA|1|1|G|2370
9SRA|1|1|U|2371
9SRA|1|1|C|2372
9SRA|1|1|G|2373
9SRA|1|1|A|2374
9SRA|1|1|A|2375
9SRA|1|1|G|2376
*
9SRA|1|1|U|2395
9SRA|1|1|G|2396
9SRA|1|1|G|2397
9SRA|1|1|A|2398
9SRA|1|1|G|2399

Current chains

Chain 1

rRNA 23S

Nearby chains