IL_9SRA_109

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UCUAC*GGCAG

Length

10 nucleotides

Bulged bases

9SRA|1|1|U|2922

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRA_109 not in the Motif Atlas

Homologous match to IL_4V9F_094

Geometric discrepancy: 0.183

The information below is about IL_4V9F_094

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_45790.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9SRA|1|1|U|2920
9SRA|1|1|C|2921
9SRA|1|1|U|2922
9SRA|1|1|A|2923
9SRA|1|1|C|2924
*
9SRA|1|1|G|2949
9SRA|1|1|G|2950
9SRA|1|1|C|2951
9SRA|1|1|A|2952
9SRA|1|1|G|2953

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BC

Large ribosomal subunit protein uL3

Chain BV

Large ribosomal subunit protein eL24

Chain Ba

Large ribosomal subunit protein eL31