IL_9SRA_136

3D structure

PDB id

9SRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGGAGAG*UGGAAC

Length

13 nucleotides

Bulged bases

9SRA|1|2|A|632

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRA|1|2|G|627
9SRA|1|2|G|628
9SRA|1|2|G|629
9SRA|1|2|A|630
9SRA|1|2|G|631
9SRA|1|2|A|632
9SRA|1|2|G|633
*
9SRA|1|2|U|707
9SRA|1|2|G|708
9SRA|1|2|G|709
9SRA|1|2|A|710
9SRA|1|2|A|711
9SRA|1|2|C|712

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AA

30S ribosomal protein S3Ae

Chain AQ

30S ribosomal protein S15

Chain AW

30S ribosomal protein S27e