IL_9SRA_170
3D structure
- PDB id
- 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGCCACA*UUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRA_170 not in the Motif Atlas
- Geometric match to IL_9E6Q_106
- Geometric discrepancy: 0.2817
- The information below is about IL_9E6Q_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_41504.2
- Basepair signature
- cWW-L-cSW-L-cSW-L-cSH-L-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9SRA|1|3|G|23
9SRA|1|3|G|24
9SRA|1|3|C|25
9SRA|1|3|C|26
9SRA|1|3|A|27
9SRA|1|3|C|28
9SRA|1|3|A|29
*
9SRA|1|3|U|55
9SRA|1|3|U|56
9SRA|1|3|A|57
9SRA|1|3|A|58
9SRA|1|3|G|59
9SRA|1|3|C|60
Current chains
- Chain 3
- rRNA 5S
Nearby chains
- Chain BE
- Large ribosomal subunit protein uL5
- Chain BO
- Large ribosomal subunit protein uL18
Coloring options: