IL_9SRB_029
3D structure
- PDB id
- 9SRB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA and SBDS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UUAAG*(4AC)GUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 4AC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRB_029 not in the Motif Atlas
- Homologous match to IL_4V9F_020
- Geometric discrepancy: 0.2245
- The information below is about IL_4V9F_020
- Detailed Annotation
- AAA cross-strand stack
- Broad Annotation
- AAA cross-strand stack
- Motif group
- IL_66798.3
- Basepair signature
- cWW-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
9SRB|1|1|U|812
9SRB|1|1|U|813
9SRB|1|1|A|814
9SRB|1|1|A|815
9SRB|1|1|G|816
*
9SRB|1|1|4AC|829
9SRB|1|1|G|830
9SRB|1|1|U|831
9SRB|1|1|A|832
9SRB|1|1|G|833
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BD
- Large ribosomal subunit protein uL4
- Chain BL
- Large ribosomal subunit protein uL15
Coloring options: