IL_9SRB_052
3D structure
- PDB id
- 9SRB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA and SBDS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CCCCAAAG*CG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRB_052 not in the Motif Atlas
- Homologous match to IL_4V9F_038
- Geometric discrepancy: 0.0746
- The information below is about IL_4V9F_038
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_11411.3
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 12
Unit IDs
9SRB|1|1|C|1254
9SRB|1|1|C|1255
9SRB|1|1|C|1256
9SRB|1|1|C|1257
9SRB|1|1|A|1258
9SRB|1|1|A|1259
9SRB|1|1|A|1260
9SRB|1|1|G|1261
*
9SRB|1|1|C|1405
9SRB|1|1|G|1406
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BI
- Large ribosomal subunit protein uL13
- Chain BY
- Large ribosomal subunit protein uL30
- Chain Bc
- Large ribosomal subunit protein eL33
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