IL_9SRB_057

3D structure

PDB id

9SRB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA and SBDS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CUUAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

9SRB|1|1|U|1300, 9SRB|1|1|A|1301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRB|1|1|C|1298
9SRB|1|1|U|1299
9SRB|1|1|U|1300
9SRB|1|1|A|1301
9SRB|1|1|G|1302
9SRB|1|1|A|1303
9SRB|1|1|C|1304
9SRB|1|1|A|1305
9SRB|1|1|G|1306
*
9SRB|1|1|U|1363
9SRB|1|1|C|1364
9SRB|1|1|G|1365
9SRB|1|1|A|1366
9SRB|1|1|G|1367

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BF

Large ribosomal subunit protein uL6

Chain BN

Large ribosomal subunit protein uL16

Chain Bl

Large ribosomal subunit protein eL20