IL_9SRB_077
3D structure
- PDB id
- 9SRB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA and SBDS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- ACU(OMC)GG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 9SRB|1|1|G|2233
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRB_077 not in the Motif Atlas
- Homologous match to IL_4V9F_062
- Geometric discrepancy: 0.0792
- The information below is about IL_4V9F_062
- Detailed Annotation
- Intercalated tWH
- Broad Annotation
- Intercalated tWH
- Motif group
- IL_28217.3
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 11
Unit IDs
9SRB|1|1|A|1945
9SRB|1|1|C|1946
9SRB|1|1|U|1947
9SRB|1|1|OMC|1948
9SRB|1|1|G|1949
9SRB|1|1|G|1950
*
9SRB|1|1|C|2231
9SRB|1|1|U|2232
9SRB|1|1|G|2233
9SRB|1|1|U|2234
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BC
- Large ribosomal subunit protein uL3
- Chain BJ
- Large ribosomal subunit protein uL14
Coloring options: