IL_9SRB_078
3D structure
- PDB id
- 9SRB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA and SBDS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- (4AC)GUAAC*GGAGAAG
- Length
- 13 nucleotides
- Bulged bases
- 9SRB|1|1|G|1975
- QA status
- Modified nucleotides: 4AC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRB_078 not in the Motif Atlas
- Homologous match to IL_4V9F_063
- Geometric discrepancy: 0.0676
- The information below is about IL_4V9F_063
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_20700.3
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
9SRB|1|1|4AC|1962
9SRB|1|1|G|1963
9SRB|1|1|U|1964
9SRB|1|1|A|1965
9SRB|1|1|A|1966
9SRB|1|1|C|1967
*
9SRB|1|1|G|1972
9SRB|1|1|G|1973
9SRB|1|1|A|1974
9SRB|1|1|G|1975
9SRB|1|1|A|1976
9SRB|1|1|A|1977
9SRB|1|1|G|1978
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain A0
- Small ribosomal subunit protein eS32
- Chain BQ
- Large ribosomal subunit protein eL19
- Chain Bi
- Large ribosomal subunit protein eL43
Coloring options: