IL_9SRB_130

3D structure

PDB id

9SRB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA and SBDS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUGGCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

9SRB|1|2|A|498, 9SRB|1|2|U|500, 9SRB|1|2|A|501

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRB|1|2|G|481
9SRB|1|2|U|482
9SRB|1|2|G|483
9SRB|1|2|G|484
9SRB|1|2|C|485
9SRB|1|2|A|486
9SRB|1|2|G|487
*
9SRB|1|2|C|494
9SRB|1|2|G|495
9SRB|1|2|G|496
9SRB|1|2|U|497
9SRB|1|2|A|498
9SRB|1|2|A|499
9SRB|1|2|U|500
9SRB|1|2|A|501
9SRB|1|2|C|502

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AN

30S ribosomal protein S12

Chain AZ

30S ribosomal protein S3

Chain H

Dehydrogenase