IL_9SRC_017

3D structure

PDB id

9SRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

AC*GGAUGU

Length

8 nucleotides

Bulged bases

9SRC|1|1|U|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRC_017 not in the Motif Atlas

Homologous match to IL_4V9F_009

Geometric discrepancy: 0.1498

The information below is about IL_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10396.3

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

8

Unit IDs

9SRC|1|1|A|381
9SRC|1|1|C|382
*
9SRC|1|1|G|404
9SRC|1|1|G|405
9SRC|1|1|A|406
9SRC|1|1|U|407
9SRC|1|1|G|408
9SRC|1|1|U|409

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BG

50S ribosomal protein L7Ae

Chain BM

Large ribosomal subunit protein eL15

Chain Bk

C2H2-type domain-containing protein