IL_9SRC_049

3D structure

PDB id

9SRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UG*CCA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRC_049 not in the Motif Atlas

Geometric match to IL_4OQU_002

Geometric discrepancy: 0.2394

The information below is about IL_4OQU_002

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.10

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

9SRC|1|1|U|1202
9SRC|1|1|G|1203
*
9SRC|1|1|C|1218
9SRC|1|1|C|1219
9SRC|1|1|A|1220

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain BY

Large ribosomal subunit protein uL30