IL_9SRC_095

3D structure

PDB id

9SRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CGUCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9SRC|1|1|U|2371, 9SRC|1|1|C|2372

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRC_095 not in the Motif Atlas

Geometric match to IL_6Q8V_001

Geometric discrepancy: 0.2975

The information below is about IL_6Q8V_001

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.3

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9SRC|1|1|C|2369
9SRC|1|1|G|2370
9SRC|1|1|U|2371
9SRC|1|1|C|2372
9SRC|1|1|G|2373
9SRC|1|1|A|2374
9SRC|1|1|A|2375
9SRC|1|1|G|2376
*
9SRC|1|1|U|2395
9SRC|1|1|G|2396
9SRC|1|1|G|2397
9SRC|1|1|A|2398
9SRC|1|1|G|2399

Current chains

Chain 1

rRNA 23S

Nearby chains