IL_9SRC_159

3D structure

PDB id

9SRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GACAAUG*CCUAAAC

Length

14 nucleotides

Bulged bases

9SRC|1|2|U|1260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRC|1|2|G|1221
9SRC|1|2|A|1222
9SRC|1|2|C|1223
9SRC|1|2|A|1224
9SRC|1|2|A|1225
9SRC|1|2|U|1226
9SRC|1|2|G|1227
*
9SRC|1|2|C|1258
9SRC|1|2|C|1259
9SRC|1|2|U|1260
9SRC|1|2|A|1261
9SRC|1|2|A|1262
9SRC|1|2|A|1263
9SRC|1|2|C|1264

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AH

30S ribosomal protein S7

Chain AK

30S ribosomal protein S9

Chain AL

30S ribosomal protein S10

Chain AP

30S ribosomal protein S14 type Z

Chain AU

30S ribosomal protein S19e