IL_9SRC_175
3D structure
- PDB id
- 9SRC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- UUGUAC*GGAAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRC_175 not in the Motif Atlas
- Geometric match to IL_4LFB_018
- Geometric discrepancy: 0.1849
- The information below is about IL_4LFB_018
- Detailed Annotation
- 6x5 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_82100.1
- Basepair signature
- cWW-tWW-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
9SRC|1|3|U|77
9SRC|1|3|U|78
9SRC|1|3|G|79
9SRC|1|3|U|80
9SRC|1|3|A|81
9SRC|1|3|C|82
*
9SRC|1|3|G|102
9SRC|1|3|G|103
9SRC|1|3|A|104
9SRC|1|3|A|105
9SRC|1|3|G|106
Current chains
- Chain 3
- rRNA 5S
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain BN
- Large ribosomal subunit protein uL16
- Chain BY
- Large ribosomal subunit protein uL30
- Chain Bl
- Large ribosomal subunit protein eL20
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