IL_9SRD_009

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CGG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRD_009 not in the Motif Atlas

Geometric match to IL_8P9A_443

Geometric discrepancy: 0.2168

The information below is about IL_8P9A_443

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

68

Unit IDs

9SRD|1|1|C|153
9SRD|1|1|G|154
9SRD|1|1|G|155
*
9SRD|1|1|C|593
9SRD|1|1|G|594

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BD

Large ribosomal subunit protein uL4

Chain BU

Large ribosomal subunit protein uL24