IL_9SRD_012

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRD_012 not in the Motif Atlas

Homologous match to IL_4V9F_005

Geometric discrepancy: 0.1618

The information below is about IL_4V9F_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

9SRD|1|1|C|287
9SRD|1|1|G|288
*
9SRD|1|1|C|316
9SRD|1|1|A|317
9SRD|1|1|G|318

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BM

Large ribosomal subunit protein eL15

Chain Be

Large ribosomal subunit protein eL37

Chain Bk

C2H2-type domain-containing protein