IL_9SRD_014

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UGAGUAG*(4AC)GAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRD_014 not in the Motif Atlas

Homologous match to IL_4V9F_007

Geometric discrepancy: 0.1228

The information below is about IL_4V9F_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9SRD|1|1|U|343
9SRD|1|1|G|344
9SRD|1|1|A|345
9SRD|1|1|G|346
9SRD|1|1|U|347
9SRD|1|1|A|348
9SRD|1|1|G|349
*
9SRD|1|1|4AC|357
9SRD|1|1|G|358
9SRD|1|1|A|359
9SRD|1|1|A|360
9SRD|1|1|A|361
9SRD|1|1|G|362

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BL

Large ribosomal subunit protein uL15

Chain BM

Large ribosomal subunit protein eL15