IL_9SRD_016
3D structure
- PDB id
- 9SRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- UGAAC*GGAUGUG
- Length
- 12 nucleotides
- Bulged bases
- 9SRD|1|1|U|407
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRD_016 not in the Motif Atlas
- Geometric match to IL_4V9F_108
- Geometric discrepancy: 0.129
- The information below is about IL_4V9F_108
- Detailed Annotation
- Kink-turn with embedded cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_65996.1
- Basepair signature
- cWW-L-cWW-L-tSH-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
9SRD|1|1|U|378
9SRD|1|1|G|379
9SRD|1|1|A|380
9SRD|1|1|A|381
9SRD|1|1|C|382
*
9SRD|1|1|G|404
9SRD|1|1|G|405
9SRD|1|1|A|406
9SRD|1|1|U|407
9SRD|1|1|G|408
9SRD|1|1|U|409
9SRD|1|1|G|410
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BG
- 50S ribosomal protein L7Ae
- Chain BM
- Large ribosomal subunit protein eL15
- Chain Bk
- C2H2-type domain-containing protein
Coloring options: