IL_9SRD_017

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

AC*GGAUGU

Length

8 nucleotides

Bulged bases

9SRD|1|1|U|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRD_017 not in the Motif Atlas

Homologous match to IL_4V9F_009

Geometric discrepancy: 0.15

The information below is about IL_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10396.3

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

8

Unit IDs

9SRD|1|1|A|381
9SRD|1|1|C|382
*
9SRD|1|1|G|404
9SRD|1|1|G|405
9SRD|1|1|A|406
9SRD|1|1|U|407
9SRD|1|1|G|408
9SRD|1|1|U|409

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BG

50S ribosomal protein L7Ae

Chain BM

Large ribosomal subunit protein eL15

Chain Bk

C2H2-type domain-containing protein