IL_9SRD_024

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

(4AC)GAAAG*CGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRD_024 not in the Motif Atlas

Geometric match to IL_9E6Q_019

Geometric discrepancy: 0.1531

The information below is about IL_9E6Q_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93336.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

5

Unit IDs

9SRD|1|1|4AC|694
9SRD|1|1|G|695
9SRD|1|1|A|696
9SRD|1|1|A|697
9SRD|1|1|A|698
9SRD|1|1|G|699
*
9SRD|1|1|C|755
9SRD|1|1|G|756
9SRD|1|1|G|757

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain B4

50S ribosomal protein L7Ae

Chain Bb

Large ribosomal subunit protein eL32

Chain Bc

Large ribosomal subunit protein eL33