IL_9SRD_026

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRD_026 not in the Motif Atlas

Geometric match to IL_9E6Q_021

Geometric discrepancy: 0.058

The information below is about IL_9E6Q_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45790.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9SRD|1|1|C|713
9SRD|1|1|G|714
9SRD|1|1|A|715
9SRD|1|1|A|716
9SRD|1|1|G|717
*
9SRD|1|1|C|741
9SRD|1|1|G|742
9SRD|1|1|A|743
9SRD|1|1|G|744

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BY

Large ribosomal subunit protein uL30

Chain Bb

Large ribosomal subunit protein eL32

Chain Bc

Large ribosomal subunit protein eL33