IL_9SRD_030

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CGCAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRD_030 not in the Motif Atlas

Homologous match to IL_4V9F_022

Geometric discrepancy: 0.1231

The information below is about IL_4V9F_022

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.3

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9SRD|1|1|C|855
9SRD|1|1|G|856
9SRD|1|1|C|857
9SRD|1|1|A|858
9SRD|1|1|G|859
*
9SRD|1|1|U|877
9SRD|1|1|G|878
9SRD|1|1|A|879
9SRD|1|1|G|880
9SRD|1|1|G|881

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BP

Large ribosomal subunit protein eL18