IL_9SRD_035

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRD_035 not in the Motif Atlas

Homologous match to IL_4V9F_027

Geometric discrepancy: 0.0948

The information below is about IL_4V9F_027

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.4

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

9SRD|1|1|U|952
9SRD|1|1|G|953
9SRD|1|1|A|954
9SRD|1|1|A|955
9SRD|1|1|G|956
*
9SRD|1|1|U|973
9SRD|1|1|G|974
9SRD|1|1|G|975
9SRD|1|1|A|976
9SRD|1|1|G|977

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BB

Large ribosomal subunit protein uL2

Chain BQ

Large ribosomal subunit protein eL19

Chain Bi

Large ribosomal subunit protein eL43