IL_9SRD_038
3D structure
- PDB id
- 9SRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- GGG*CAAUC
- Length
- 8 nucleotides
- Bulged bases
- 9SRD|1|1|G|1027, 9SRD|1|1|A|1039, 9SRD|1|1|A|1040, 9SRD|1|1|U|1041
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRD_038 not in the Motif Atlas
- Homologous match to IL_4V9F_030
- Geometric discrepancy: 0.0878
- The information below is about IL_4V9F_030
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_57881.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
9SRD|1|1|G|1026
9SRD|1|1|G|1027
9SRD|1|1|G|1028
*
9SRD|1|1|C|1038
9SRD|1|1|A|1039
9SRD|1|1|A|1040
9SRD|1|1|U|1041
9SRD|1|1|C|1042
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BB
- Large ribosomal subunit protein uL2
- Chain BM
- Large ribosomal subunit protein eL15
- Chain BS
- Large ribosomal subunit protein uL22
- Chain Be
- Large ribosomal subunit protein eL37
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