IL_9SRD_045

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

AUUG*CUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRD_045 not in the Motif Atlas

Homologous match to IL_4V9F_036

Geometric discrepancy: 0.3243

The information below is about IL_4V9F_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02203.1

Basepair signature

cWW-cSW-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9SRD|1|1|A|1122
9SRD|1|1|U|1123
9SRD|1|1|U|1124
9SRD|1|1|G|1125
*
9SRD|1|1|C|1156
9SRD|1|1|U|1157
9SRD|1|1|G|1158
9SRD|1|1|U|1159

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BN

Large ribosomal subunit protein uL16

Chain H

Dehydrogenase