IL_9SRD_051

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CCCCAAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRD_051 not in the Motif Atlas

Homologous match to IL_4V9F_038

Geometric discrepancy: 0.0647

The information below is about IL_4V9F_038

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.3

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

9SRD|1|1|C|1254
9SRD|1|1|C|1255
9SRD|1|1|C|1256
9SRD|1|1|C|1257
9SRD|1|1|A|1258
9SRD|1|1|A|1259
9SRD|1|1|A|1260
9SRD|1|1|G|1261
*
9SRD|1|1|C|1405
9SRD|1|1|G|1406

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BI

Large ribosomal subunit protein uL13

Chain BY

Large ribosomal subunit protein uL30

Chain Bc

Large ribosomal subunit protein eL33