IL_9SRD_055

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9SRD|1|1|U|1288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRD_055 not in the Motif Atlas

Homologous match to IL_4V9F_041

Geometric discrepancy: 0.1814

The information below is about IL_4V9F_041

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

77

Unit IDs

9SRD|1|1|G|1287
9SRD|1|1|U|1288
9SRD|1|1|G|1289
*
9SRD|1|1|C|1376
9SRD|1|1|C|1377

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain BF

Large ribosomal subunit protein uL6

Chain Bg

Large ribosomal subunit protein eL40

Chain Bl

Large ribosomal subunit protein eL20