IL_9SRD_068

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CUAAG*CGAAUG

Length

11 nucleotides

Bulged bases

9SRD|1|1|U|1796

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRD_068 not in the Motif Atlas

Homologous match to IL_4V9F_056

Geometric discrepancy: 0.4826

The information below is about IL_4V9F_056

Detailed Annotation

tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_62654.1

Basepair signature

cWW-tSH-tHH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

9SRD|1|1|C|1740
9SRD|1|1|U|1741
9SRD|1|1|A|1742
9SRD|1|1|A|1743
9SRD|1|1|G|1744
*
9SRD|1|1|C|1792
9SRD|1|1|G|1793
9SRD|1|1|A|1794
9SRD|1|1|A|1795
9SRD|1|1|U|1796
9SRD|1|1|G|1797

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BQ

Large ribosomal subunit protein eL19

Chain Bd

Large ribosomal subunit protein eL34