IL_9SRD_071

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GGGAAAC*GGC

Length

10 nucleotides

Bulged bases

9SRD|1|1|G|1928, 9SRD|1|1|A|1929

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRD|1|1|G|1926
9SRD|1|1|G|1927
9SRD|1|1|G|1928
9SRD|1|1|A|1929
9SRD|1|1|A|1930
9SRD|1|1|A|1931
9SRD|1|1|C|1932
*
9SRD|1|1|G|2245
9SRD|1|1|G|2246
9SRD|1|1|C|2247

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BC

Large ribosomal subunit protein uL3

Chain BS

Large ribosomal subunit protein uL22

Chain Ba

Large ribosomal subunit protein eL31